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Publications

Selected Publications

Uhrig Lab HQP (Bold & Italics)
2022
Mehta D, Ahkami AH, Walley J, Xu SL, Uhrig RG. The incongruity of validating quantitative proteomics using western blots. Nature Plants. Dec 01. doi: 10.1038/s41477-022-01314-8.
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Rodriguez MC, Li Q, Mehta D, Uhrig RG. Genome-scale analysis of Arabidopsis splicing-related protein kinase families reveals roles in abiotic stress adaptation. BMC Plant Biol. Oct 22. doi: 10.1186/s12870-022-03870-9.
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Scandola S, Mehta D, Castillo B, Boyce N and Uhrig RG. Integrated systems-level proteomics and metabolomics reveals the diel molecular landscape of diverse kale cultivars. BioRxiv. doi: https://doi.org/10.1101/2022.04.09.487754
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Adhikary D, Mehta D, Uhrig RG, Rahman H and Kav NV. A Proteome-level investigation into Plasmodiophora brassicae resistance in Brassica napus canola. Frontiers in Plant Science. Mar 24. doi: 10.3389/fpls.2022.860393
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Mehta D, Scandola S and Uhrig RG. BoxCar and library-free data-independent acquisition substantially improve the depth, range, and completeness of label-free quantitative proteomics. Analytical Chemistry. Jan 3. doi: 10.1021/acs.analchem.1c03338
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Mehta et al 2020 - Pre-Print. BioRxiv. https://doi.org/10.1101/2020.11.07.372276​
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Scandola S, Mehta D, Rodriguez M, Li Q and Uhrig RG. Multi-omic analysis of the Arabidopsis clock activator mutant rve 4 6 8 reveals connections to carbohydrate metabolism and proteasome regulation. Plant Physiology. 07 June. doi.org/10.1093/plphys/kiac269
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Scandola et al 2021 - BioRxiv. https://doi.org/10.1101/2021.10.25.465654
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2021
Rodriguez MC*, Mehta D*, Tan M and Uhrig RG. Quantitative proteome and PTMome analysis of Arabidopsis thaliana root responses to persistent osmotic and salinity stress.​ Plant and Cell Physiology. Jul 27. https://doi.org/10.1093/pcp/pcab076 
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Rodriguez et al 2020 - Pre-Print. BioRxiv. Dec 29. https://doi.org/10.1101/2020.12.28.424236
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** PCP Research Highlight June 2021 - "Don’t sweat it – multifaceted omics networks help plants cope with stress" **
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Schläpfer, P* Mehta D*, Ridderikhoff, C and Uhrig RG. DomainViz: intuitive visualization of consensus domain distributions across groups of proteins. Nucleic Acids Research. May 22. https://doi.org/10.1093/nar/gkab391
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Mehta D, Krahmer J and Uhrig RG. Closing the protein gap in plant chronobiology. The Plant Journal. Mar 30. https://doi.org/10.1111/tpj.15254
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2020
Uhrig RG, Eschevarria-Zomeno S,Schlapfer P, Grossmann J, Roschitzki B, Koerber N, Fiorani F, Gruissem W. Diurnal Dynamics of the Arabidopsis Rosette Proteome and Phosphoproteome. Plant Cell Environment. Dec 5. doi: 10.1111/pce.13969
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Uhrig et al 2020 - Pre-Print. BioRxiv. Sept 12. doi: 10.1101/2020.09.11.293779
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Mehta D, Ghahremani M, Perez-Fernandez M, Tan M, Schlapfer P, Plaxton WC, Uhrig RG. Phosphate and phosphite differentially impact the proteome and phosphoproteome of Arabidopsis suspension cell cultures. The Plant Journal. Nov 13. doi: 10.1111/tpj.15078​
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Mehta et al 2020 - Pre-Print. BioRxiv. May 29. doi: 10.1101/2020.05.29.124040
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2019
Uhrig RG, Schläpfer P, Roschitzki B, Hirsch-Hoffmann M, Gruissem W. Diurnal changes in concerted plant protein phosphorylation and acetylation in Arabidopsis organs and seedlings. The Plant Journal. Mar 28. doi: 10.1111/tpj.14315.
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2018
Labandera AM, Uhrig RG, Colville K, Moorhead GB, Ng KKS. Structural basis for the preference of the Arabidopsis thaliana phosphatase RLPH2 for tyrosine-phosphorylated substrates. Science Signalling. 11(524). doi: 10.1126/scisignal.aan8804.
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2017
Hartl M, Füßl M, Boersema PJ, Jost JO, Kramer K, Bakirbas A, Sindlinger J, Plöchinger M, Leister D, Uhrig G, Moorhead GB, Cox J, Salvucci ME, Schwarzer D, Mann M, Finkemeier I. Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in Arabidopsis. Molecular Systems Biology. 13(10):949. doi: 10.15252/msb.20177819.
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Uhrig RG, Schlapfer P, Mehta D, Hirsch-Hoffmann M and Gruissem W. Genome-scale analysis of regulatory protein acetylation enzymes from photosynthetic eukaryotes. BMC Genomics. 2017. 18(1):514. doi: 10.1186/s12864-017-3894-0.
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Graf A*, Coman D*, Uhrig RG*, Walsh S, Flis A, Stitt M and Gruissem W. Parallel analysis of Arabidopsis circadian clock mutants reveals different scales of transcriptome and proteome regulation. Open Biology. 7(3). doi: 10.1098/rsob.160333.
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Uhrig RG, Labandera A-M, Tang L-Y, Sieben NA, Goudreault M, Yeung ECT, Gingras A-C, Samuel M and Moorhead GB. Activation of mitochondrial protein phosphatase SLP2 by MIA40 regulates seed germination. Plant Physiology. 173(2):956-969. doi: 10.1104/pp.16.01641.
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2016
Uhrig RG*, Labandera* A-M, Muhammad J, Samuel M and Moorhead GB. Rhizobiale-like phosphatase 2 from Arabidopsis thaliana is a novel phospho-tyrosine specific PPP-family protein phosphatase. Journal of Biological Chemistry. 291(11):5926-34. doi: 10.1074/jbc.M115.683656.
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2015
Kerk D, Silver DM, Uhrig RG and Moorhead GB. “PP2C7s”, Genes most highly elaborated in photosynthetic organisms, reveal the bacterial origin and stepwise evolution of PPM/PP2C protein phosphatases. PLoS One. 10(8):e0132863. doi: 10.1371/journal.pone.0132863.
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2013
Uhrig RG*, Kerk D* and Moorhead GB. Evolution of bacterial-like PPP protein phosphatases in photosynthetic eukaryotes features ancestral mitochondrial or archaeal origin overlaid by lateral gene transfer. Plant Physiology. 163(4):1829-43.  doi: 10.1104/pp.113.224378.
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Uhrig RG, Labandera A-M and Moorhead GB. Arabidopsis PPP serine / threonine protein phosphatases: many targets but few engines. Trends in Plant Science. 18(9): 505-13. doi: 10.1016/j.tplants.2013.05.004.
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Uhrig RG and Moorhead GB. Plant Proteomics: current status and future prospects. Journal of Proteomics. 88:34-6. doi: 10.1016/j.jprot.2013.01.018.
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Skene-Arnold TD, Luu HA, Uhrig RG, De Wever V, Nimick M, Maynes J, Fong A, James MN, Trinkle-Mulcahy L, Moorhead GB, Holmes CF.
Molecular mechanisms underlying the interaction of protein phosphatase-1c with ASPP proteins. Biochemical Journal. 449(3):649-59. doi: 10.1042/BJ20120506.
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2012
Tran HT*, Nimick M*, Uhrig RG*, Templeton G, Morrice N, Gourlay R, Delong A and Moorhead GB. Arabidopsis thaliana Histone Deacetylase 14 (Hda14) is an α-Tubulin Deacetylase that associates with Pp2a and enriches in the microtubule fraction with the putative Histone Acetyltransferase Elp3. The Plant Journal. 71(2):263-72. doi: 10.1111/j.1365-313X.2012.04984.x.
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2011
Uhrig RG and Moorhead GB. Two ancient bacterial-like PPP family phosphatases from Arabidopsis thaliana are highly conserved plant proteins that possess unique properties. Plant Physiology. 157(4):1778-92. doi: 10.1104/pp.111.182493.

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Copyright © 2018
Photo used under Creative Commons from Tyler Merbler
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