Selected Publications
Uhrig Lab HQP (Bold & Italics)
2022
Mehta D, Ahkami AH, Walley J, Xu SL, Uhrig RG. The incongruity of validating quantitative proteomics using western blots. Nature Plants. Dec 01. doi: 10.1038/s41477-022-01314-8.
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Rodriguez MC, Li Q, Mehta D, Uhrig RG. Genome-scale analysis of Arabidopsis splicing-related protein kinase families reveals roles in abiotic stress adaptation. BMC Plant Biol. Oct 22. doi: 10.1186/s12870-022-03870-9.
Download
Scandola S, Mehta D, Castillo B, Boyce N and Uhrig RG. Integrated systems-level proteomics and metabolomics reveals the diel molecular landscape of diverse kale cultivars. BioRxiv. doi: https://doi.org/10.1101/2022.04.09.487754
Download
Adhikary D, Mehta D, Uhrig RG, Rahman H and Kav NV. A Proteome-level investigation into Plasmodiophora brassicae resistance in Brassica napus canola. Frontiers in Plant Science. Mar 24. doi: 10.3389/fpls.2022.860393
Download
Mehta D, Scandola S and Uhrig RG. BoxCar and library-free data-independent acquisition substantially improve the depth, range, and completeness of label-free quantitative proteomics. Analytical Chemistry. Jan 3. doi: 10.1021/acs.analchem.1c03338
Download
Mehta et al 2020 - Pre-Print. BioRxiv. https://doi.org/10.1101/2020.11.07.372276
Download
Scandola S, Mehta D, Rodriguez M, Li Q and Uhrig RG. Multi-omic analysis of the Arabidopsis clock activator mutant rve 4 6 8 reveals connections to carbohydrate metabolism and proteasome regulation. Plant Physiology. 07 June. doi.org/10.1093/plphys/kiac269
Download
Scandola et al 2021 - BioRxiv. https://doi.org/10.1101/2021.10.25.465654
Download
2021
Rodriguez MC*, Mehta D*, Tan M and Uhrig RG. Quantitative proteome and PTMome analysis of Arabidopsis thaliana root responses to persistent osmotic and salinity stress. Plant and Cell Physiology. Jul 27. https://doi.org/10.1093/pcp/pcab076
Download
Rodriguez et al 2020 - Pre-Print. BioRxiv. Dec 29. https://doi.org/10.1101/2020.12.28.424236
Download
** PCP Research Highlight June 2021 - "Don’t sweat it – multifaceted omics networks help plants cope with stress" **
Download
Schläpfer, P* Mehta D*, Ridderikhoff, C and Uhrig RG. DomainViz: intuitive visualization of consensus domain distributions across groups of proteins. Nucleic Acids Research. May 22. https://doi.org/10.1093/nar/gkab391
Download
Mehta D, Krahmer J and Uhrig RG. Closing the protein gap in plant chronobiology. The Plant Journal. Mar 30. https://doi.org/10.1111/tpj.15254
Download
2020
Uhrig RG, Eschevarria-Zomeno S,Schlapfer P, Grossmann J, Roschitzki B, Koerber N, Fiorani F, Gruissem W. Diurnal Dynamics of the Arabidopsis Rosette Proteome and Phosphoproteome. Plant Cell Environment. Dec 5. doi: 10.1111/pce.13969
Download
Uhrig et al 2020 - Pre-Print. BioRxiv. Sept 12. doi: 10.1101/2020.09.11.293779
Download
Mehta D, Ghahremani M, Perez-Fernandez M, Tan M, Schlapfer P, Plaxton WC, Uhrig RG. Phosphate and phosphite differentially impact the proteome and phosphoproteome of Arabidopsis suspension cell cultures. The Plant Journal. Nov 13. doi: 10.1111/tpj.15078
Download
Mehta et al 2020 - Pre-Print. BioRxiv. May 29. doi: 10.1101/2020.05.29.124040
Download
2019
Uhrig RG, Schläpfer P, Roschitzki B, Hirsch-Hoffmann M, Gruissem W. Diurnal changes in concerted plant protein phosphorylation and acetylation in Arabidopsis organs and seedlings. The Plant Journal. Mar 28. doi: 10.1111/tpj.14315.
Download
2018
Labandera AM, Uhrig RG, Colville K, Moorhead GB, Ng KKS. Structural basis for the preference of the Arabidopsis thaliana phosphatase RLPH2 for tyrosine-phosphorylated substrates. Science Signalling. 11(524). doi: 10.1126/scisignal.aan8804.
Download
2017
Hartl M, Füßl M, Boersema PJ, Jost JO, Kramer K, Bakirbas A, Sindlinger J, Plöchinger M, Leister D, Uhrig G, Moorhead GB, Cox J, Salvucci ME, Schwarzer D, Mann M, Finkemeier I. Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in Arabidopsis. Molecular Systems Biology. 13(10):949. doi: 10.15252/msb.20177819.
Download
Uhrig RG, Schlapfer P, Mehta D, Hirsch-Hoffmann M and Gruissem W. Genome-scale analysis of regulatory protein acetylation enzymes from photosynthetic eukaryotes. BMC Genomics. 2017. 18(1):514. doi: 10.1186/s12864-017-3894-0.
Download
Graf A*, Coman D*, Uhrig RG*, Walsh S, Flis A, Stitt M and Gruissem W. Parallel analysis of Arabidopsis circadian clock mutants reveals different scales of transcriptome and proteome regulation. Open Biology. 7(3). doi: 10.1098/rsob.160333.
Download
Uhrig RG, Labandera A-M, Tang L-Y, Sieben NA, Goudreault M, Yeung ECT, Gingras A-C, Samuel M and Moorhead GB. Activation of mitochondrial protein phosphatase SLP2 by MIA40 regulates seed germination. Plant Physiology. 173(2):956-969. doi: 10.1104/pp.16.01641.
Download
2016
Uhrig RG*, Labandera* A-M, Muhammad J, Samuel M and Moorhead GB. Rhizobiale-like phosphatase 2 from Arabidopsis thaliana is a novel phospho-tyrosine specific PPP-family protein phosphatase. Journal of Biological Chemistry. 291(11):5926-34. doi: 10.1074/jbc.M115.683656.
Download
2015
Kerk D, Silver DM, Uhrig RG and Moorhead GB. “PP2C7s”, Genes most highly elaborated in photosynthetic organisms, reveal the bacterial origin and stepwise evolution of PPM/PP2C protein phosphatases. PLoS One. 10(8):e0132863. doi: 10.1371/journal.pone.0132863.
Download
2013
Uhrig RG*, Kerk D* and Moorhead GB. Evolution of bacterial-like PPP protein phosphatases in photosynthetic eukaryotes features ancestral mitochondrial or archaeal origin overlaid by lateral gene transfer. Plant Physiology. 163(4):1829-43. doi: 10.1104/pp.113.224378.
Download
Uhrig RG, Labandera A-M and Moorhead GB. Arabidopsis PPP serine / threonine protein phosphatases: many targets but few engines. Trends in Plant Science. 18(9): 505-13. doi: 10.1016/j.tplants.2013.05.004.
Download
Uhrig RG and Moorhead GB. Plant Proteomics: current status and future prospects. Journal of Proteomics. 88:34-6. doi: 10.1016/j.jprot.2013.01.018.
Download
Skene-Arnold TD, Luu HA, Uhrig RG, De Wever V, Nimick M, Maynes J, Fong A, James MN, Trinkle-Mulcahy L, Moorhead GB, Holmes CF. Molecular mechanisms underlying the interaction of protein phosphatase-1c with ASPP proteins. Biochemical Journal. 449(3):649-59. doi: 10.1042/BJ20120506.
Download
2012
Tran HT*, Nimick M*, Uhrig RG*, Templeton G, Morrice N, Gourlay R, Delong A and Moorhead GB. Arabidopsis thaliana Histone Deacetylase 14 (Hda14) is an α-Tubulin Deacetylase that associates with Pp2a and enriches in the microtubule fraction with the putative Histone Acetyltransferase Elp3. The Plant Journal. 71(2):263-72. doi: 10.1111/j.1365-313X.2012.04984.x.
Download
2011
Uhrig RG and Moorhead GB. Two ancient bacterial-like PPP family phosphatases from Arabidopsis thaliana are highly conserved plant proteins that possess unique properties. Plant Physiology. 157(4):1778-92. doi: 10.1104/pp.111.182493.
Download
2022
Mehta D, Ahkami AH, Walley J, Xu SL, Uhrig RG. The incongruity of validating quantitative proteomics using western blots. Nature Plants. Dec 01. doi: 10.1038/s41477-022-01314-8.
Download
Rodriguez MC, Li Q, Mehta D, Uhrig RG. Genome-scale analysis of Arabidopsis splicing-related protein kinase families reveals roles in abiotic stress adaptation. BMC Plant Biol. Oct 22. doi: 10.1186/s12870-022-03870-9.
Download
Scandola S, Mehta D, Castillo B, Boyce N and Uhrig RG. Integrated systems-level proteomics and metabolomics reveals the diel molecular landscape of diverse kale cultivars. BioRxiv. doi: https://doi.org/10.1101/2022.04.09.487754
Download
Adhikary D, Mehta D, Uhrig RG, Rahman H and Kav NV. A Proteome-level investigation into Plasmodiophora brassicae resistance in Brassica napus canola. Frontiers in Plant Science. Mar 24. doi: 10.3389/fpls.2022.860393
Download
Mehta D, Scandola S and Uhrig RG. BoxCar and library-free data-independent acquisition substantially improve the depth, range, and completeness of label-free quantitative proteomics. Analytical Chemistry. Jan 3. doi: 10.1021/acs.analchem.1c03338
Download
Mehta et al 2020 - Pre-Print. BioRxiv. https://doi.org/10.1101/2020.11.07.372276
Download
Scandola S, Mehta D, Rodriguez M, Li Q and Uhrig RG. Multi-omic analysis of the Arabidopsis clock activator mutant rve 4 6 8 reveals connections to carbohydrate metabolism and proteasome regulation. Plant Physiology. 07 June. doi.org/10.1093/plphys/kiac269
Download
Scandola et al 2021 - BioRxiv. https://doi.org/10.1101/2021.10.25.465654
Download
2021
Rodriguez MC*, Mehta D*, Tan M and Uhrig RG. Quantitative proteome and PTMome analysis of Arabidopsis thaliana root responses to persistent osmotic and salinity stress. Plant and Cell Physiology. Jul 27. https://doi.org/10.1093/pcp/pcab076
Download
Rodriguez et al 2020 - Pre-Print. BioRxiv. Dec 29. https://doi.org/10.1101/2020.12.28.424236
Download
** PCP Research Highlight June 2021 - "Don’t sweat it – multifaceted omics networks help plants cope with stress" **
Download
Schläpfer, P* Mehta D*, Ridderikhoff, C and Uhrig RG. DomainViz: intuitive visualization of consensus domain distributions across groups of proteins. Nucleic Acids Research. May 22. https://doi.org/10.1093/nar/gkab391
Download
Mehta D, Krahmer J and Uhrig RG. Closing the protein gap in plant chronobiology. The Plant Journal. Mar 30. https://doi.org/10.1111/tpj.15254
Download
2020
Uhrig RG, Eschevarria-Zomeno S,Schlapfer P, Grossmann J, Roschitzki B, Koerber N, Fiorani F, Gruissem W. Diurnal Dynamics of the Arabidopsis Rosette Proteome and Phosphoproteome. Plant Cell Environment. Dec 5. doi: 10.1111/pce.13969
Download
Uhrig et al 2020 - Pre-Print. BioRxiv. Sept 12. doi: 10.1101/2020.09.11.293779
Download
Mehta D, Ghahremani M, Perez-Fernandez M, Tan M, Schlapfer P, Plaxton WC, Uhrig RG. Phosphate and phosphite differentially impact the proteome and phosphoproteome of Arabidopsis suspension cell cultures. The Plant Journal. Nov 13. doi: 10.1111/tpj.15078
Download
Mehta et al 2020 - Pre-Print. BioRxiv. May 29. doi: 10.1101/2020.05.29.124040
Download
2019
Uhrig RG, Schläpfer P, Roschitzki B, Hirsch-Hoffmann M, Gruissem W. Diurnal changes in concerted plant protein phosphorylation and acetylation in Arabidopsis organs and seedlings. The Plant Journal. Mar 28. doi: 10.1111/tpj.14315.
Download
2018
Labandera AM, Uhrig RG, Colville K, Moorhead GB, Ng KKS. Structural basis for the preference of the Arabidopsis thaliana phosphatase RLPH2 for tyrosine-phosphorylated substrates. Science Signalling. 11(524). doi: 10.1126/scisignal.aan8804.
Download
2017
Hartl M, Füßl M, Boersema PJ, Jost JO, Kramer K, Bakirbas A, Sindlinger J, Plöchinger M, Leister D, Uhrig G, Moorhead GB, Cox J, Salvucci ME, Schwarzer D, Mann M, Finkemeier I. Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in Arabidopsis. Molecular Systems Biology. 13(10):949. doi: 10.15252/msb.20177819.
Download
Uhrig RG, Schlapfer P, Mehta D, Hirsch-Hoffmann M and Gruissem W. Genome-scale analysis of regulatory protein acetylation enzymes from photosynthetic eukaryotes. BMC Genomics. 2017. 18(1):514. doi: 10.1186/s12864-017-3894-0.
Download
Graf A*, Coman D*, Uhrig RG*, Walsh S, Flis A, Stitt M and Gruissem W. Parallel analysis of Arabidopsis circadian clock mutants reveals different scales of transcriptome and proteome regulation. Open Biology. 7(3). doi: 10.1098/rsob.160333.
Download
Uhrig RG, Labandera A-M, Tang L-Y, Sieben NA, Goudreault M, Yeung ECT, Gingras A-C, Samuel M and Moorhead GB. Activation of mitochondrial protein phosphatase SLP2 by MIA40 regulates seed germination. Plant Physiology. 173(2):956-969. doi: 10.1104/pp.16.01641.
Download
2016
Uhrig RG*, Labandera* A-M, Muhammad J, Samuel M and Moorhead GB. Rhizobiale-like phosphatase 2 from Arabidopsis thaliana is a novel phospho-tyrosine specific PPP-family protein phosphatase. Journal of Biological Chemistry. 291(11):5926-34. doi: 10.1074/jbc.M115.683656.
Download
2015
Kerk D, Silver DM, Uhrig RG and Moorhead GB. “PP2C7s”, Genes most highly elaborated in photosynthetic organisms, reveal the bacterial origin and stepwise evolution of PPM/PP2C protein phosphatases. PLoS One. 10(8):e0132863. doi: 10.1371/journal.pone.0132863.
Download
2013
Uhrig RG*, Kerk D* and Moorhead GB. Evolution of bacterial-like PPP protein phosphatases in photosynthetic eukaryotes features ancestral mitochondrial or archaeal origin overlaid by lateral gene transfer. Plant Physiology. 163(4):1829-43. doi: 10.1104/pp.113.224378.
Download
Uhrig RG, Labandera A-M and Moorhead GB. Arabidopsis PPP serine / threonine protein phosphatases: many targets but few engines. Trends in Plant Science. 18(9): 505-13. doi: 10.1016/j.tplants.2013.05.004.
Download
Uhrig RG and Moorhead GB. Plant Proteomics: current status and future prospects. Journal of Proteomics. 88:34-6. doi: 10.1016/j.jprot.2013.01.018.
Download
Skene-Arnold TD, Luu HA, Uhrig RG, De Wever V, Nimick M, Maynes J, Fong A, James MN, Trinkle-Mulcahy L, Moorhead GB, Holmes CF. Molecular mechanisms underlying the interaction of protein phosphatase-1c with ASPP proteins. Biochemical Journal. 449(3):649-59. doi: 10.1042/BJ20120506.
Download
2012
Tran HT*, Nimick M*, Uhrig RG*, Templeton G, Morrice N, Gourlay R, Delong A and Moorhead GB. Arabidopsis thaliana Histone Deacetylase 14 (Hda14) is an α-Tubulin Deacetylase that associates with Pp2a and enriches in the microtubule fraction with the putative Histone Acetyltransferase Elp3. The Plant Journal. 71(2):263-72. doi: 10.1111/j.1365-313X.2012.04984.x.
Download
2011
Uhrig RG and Moorhead GB. Two ancient bacterial-like PPP family phosphatases from Arabidopsis thaliana are highly conserved plant proteins that possess unique properties. Plant Physiology. 157(4):1778-92. doi: 10.1104/pp.111.182493.
Download