Selected Publications
|
Uhrig Lab HQP (Bold & Italics)
2026 Hassan N, Braun S, Fahlman RP and Uhrig RG. New Opportunities for BONCAT use in Plants. Trends in Plant Science. May 14. doi: 10.1016/j.tplants.2026.04.019. Download Scandola S, Grubb LE, Castillo B, Iliscupidex L, Kennedy C, Boyce N, Talasila M and Uhrig RG. Shaping Kale Morphology and Physiology Using Different LED Light Recipes. Journal of Experimental Botany. Apr 02. doi: 10.1093/jxb/erag163. Download Scandola et al 2025 - Pre-Print BioRxiv. Oct 10. doi: https://doi.org/10.1101/2024.10.10.617428. Download Labandera AM, Toth R, Mitchell S, Johnson JJ, Kurucz B, Puyaubert J, Baudouin E, Uhrig RG, Moorhead GB. Phospho-Proteomics Identifies D-Group MAP Kinases as Substrates of the Arabidopsis Tyrosine Phosphatase RLPH2 Plant Direct. Jan 20. doi: 10.1002/pld3.70137. Download Labandera et al 2024 - Pre-Print BioRxiv. Aug 26. doi: https://doi.org/10.1101/2024.08.26.609716. Download 2025 Smith MA, Grubb LE, Benidickson KH, Mehta D, Plaxton WC, Uhrig RG. Phosphate resupply differentially impacts the shoot and root proteomes of Arabidopsis thaliana seedlings. Plant, Cell & Environment. Dec 10. doi: 10.1111/pce.70311. Download Smith et al 2025 - Pre-Print BioRxiv. Jun 28. doi: https://doi.org/10.1101/2025.06.28.661392. Download Kalinger KS, Gallipeau-Burns E, Hossain MdM, Nourimand M, Mietkiewska E, Talasila M, Uhrig RG, Todd CD, MacLean AM. TurboID-based proximity labeling enables in vivo mapping of Plasmodiophora brassicae secretome in Arabidopsis. Pre-Print BioRxiv. Nov 18. doi: https://doi.org/10.1101/2025.11.18.684874. Download Hassan N, Braun S, Talasila M, Fahlman RP, Uhrig RG. Optimization of Bio-Orthogonal Non-Canonical Amino acid Tagging (BONCAT) for effective low-disruption labelling of Arabidopsis proteins in vivo. Plant Physiology. Nov 07. doi: 10.1093/plphys/kiaf573. Download Hassan et al 2025 - Pre-Print BioRxiv. May 22. doi: https://doi.org/10.1101/2025.05.22.655591. Download Lau Z-X, Grubb LE, Devang Mehta, Uhrig RG. The discovery of twilight length sensing in plants and its implications for models of plant photoperiodism. New Phytologist. Oct 10. doi/10.1111/nph.70611. Download Korek M, Buchcik W, Chmielewska B, Daszkowska-Golec A, Fontana IM, Melzer M, Hensel G, Kumlehn J, Brewer PB, Uhrig RG, Marzec M. The cost of survival: mutation in a barley Strigolactone repressor HvD53A impairs photosynthesis but increases drought tolerance. Plant and Cell Physiology. Aug 12. doi: 10.1093/pcp/pcaf095. Download Kaur K, Adhikary D, Kav NNV, Scandola S, Uhrig RG, Rahman H. Proteomics Integrated with Transcriptomics of Clubroot Resistant and Susceptible Brassica napus in Response to Plasmodiophora brassicae Infection. International Journal of Molecular Sciences. Sept 19. doi: 10.3390/ijms26189157. Download Boyd A, Lummer C, Mehta D, Uhrig RG, Blewett TA. Getting over it? A proteomic analysis of mechanisms driving multigenerational acclimation to organic ultraviolet filters in Daphnia magna. Environmental Pollution. Aug 1. doi: 10.1016/j.envpol.2025.126934. Download Grubb LE, Talasila M, Gorim LY, Uhrig RG. Defining the molecular impacts of Humalite application on field-grown wheat (Triticum aestivum L.) using quantitative proteomics. Proteomics. Jun 23. doi: 10.1002/pmic.13981. Download Grubb et al., 2024 - Pre-Print BioRxiv. Dec 21. doi: https://doi.org/10.1101/2024.12.18.629253. Download Li Q, Wang L, Rodriguez Gallo MC, Mehta D, Scandola S, Talasila M, Uhrig RG. B4 Raf-like MAPKKK RAF24 regulates Arabidopsis thaliana flowering time through HISTONE MONO-UBIQUITINATION 2. New Phytologist. Apr 02. doi: 10.1111/nph.70192. Download Li et al., 2024 - Pre-Print BioRxiv. Jun 12. doi: https://doi.org/10.1101/2024.06.12.598286. Download Rodriguez Gallo MC, Murray C, Kennedy C, Talasila M, Bhatt C, Steyer J, Glover M, Uhrig RG. Chemical inhibition of splicing-related protein kinases reveals phosphorylation-driven regulation of RNA alternative splicing in Arabidopsis seedlings. Pre-Print BioRxiv. Mar 24. doi: https://doi.org/10.1101/2025.03.24.644839. Download Geddes-McAlister J, Uhrig RG. The plant proteome delivers from discovery to innovation. Trends in Plant Science. Apr 01. doi: 10.1016/j.tplants.2025.03.003. Download 2024 Anderton CR and Uhrig RG. The promising role of proteomes and metabolomes in defining the single-cell landscapes of plants. New Phytologist. Dec 4. doi: 10.1111/nph.20303. Download Gonçalves Dias M, Dharmasena T, Gonzalez-Ferrer C, Maika JE, Rodriguez Gallo MC, Miguel VN, Dou R, Bredow M, Siegel KR, Uhrig RG, Simon R, Monaghan J. Catalytically inactive subgroup VIII receptor-like cytoplasmic kinases regulate the immune-triggered oxidative burst in Arabidopsis thaliana. Journal of Experimental Botany. Nov 29. doi: 10.1093/jxb/erae486. Download Gonçalves Dias et al., 2024 - Pre-Print BioRxiv. May 30. doi: https://doi.org/10.1101/2024.05.30.596543. Download Grubb LE, Scandola S, Mehta D, Khodabocus I, Uhrig RG. Quantitative proteomic analysis of Brassica Napus reveals intersections between nutrient deficiency responses. Plant, Cell & Environment. Oct 24. doi: 10.1111/pce.15216. Download Grubb et al., 2024 - Pre-Print BioRxiv. Sept 01. doi: https://doi.org/10.1101/2024.09.01.610712. Download Gonçalves Dias M, Doss B, Rawat A, Siegel KR, Mahathanthrige T, Sklenar J, Rodriguez Gallo MC, Derbyshire P, Dharmasena T, Cameron E, Uhrig RG, Zipfel C, Menke FLH, Monaghan J. Subfamily C7 Raf-like kinases MRK1, RAF26, and RAF39 regulate immune homeostasis and stomatal opening in Arabidopsis thaliana. New Phytologist. Oct 24. doi: 10.1111/nph.20198. Download Mehta D, Scandola S, Kennedy C, Lummer C, Rodriguez Gallo MC, Grubb LE, Tan M, Scarpella E, Uhrig RG. Twilight length alters growth and flowering time in Arabidopsis via LHY/CCA1. Science Advances. Jun 28. doi: 10.1126/sciadv.adl3199. Download Mehta et al., 2023 - Pre-Print. BioRxiv. Jun 09. doi: https://doi.org/10.1101/2023.06.09.544111. Download Korek M, Uhrig RG, Marzec M. Strigolactone insensitivity affects differential shoot and root transcriptome in barley. Journal of Applied Genetics. Jun 14. 10.1007/s13353-024-00885-w. Download Adhikary D, Mehta D, Kisiala A, Basu U, Uhrig RG, Emery NRJ, Rahman H, Kav NNV. Proteome- and metabolome-level changes during early stages of clubroot infection in Brassica napus canola. Molecular Omics. Feb 9. doi: 10.1039/d3mo00210a. Download 2023 Rodriguez Gallo MC, Li Q, Talasila M, Uhrig RG. Quantitative time-course analysis of osmotic and salt stress in Arabidopsis thaliana using short gradient multi-CV FAIMSpro BoxCar DIA. Molecular and Cell Proteomics. Sept 13. doi: 10.1016/j.mcpro.2023.100638. Download Rodriguez et al., 2023 - Pre-print. BioRxiv. doi: https://doi.org/10.1101/2023.02.22.529555. Download Daszkowska-Golec A, Mehta D, Uhrig RG, Brąszewska A, Novak O, Fontana I, Melzer M, Płociniczak T, Marzec M. Multi-omics insights into the positive role of strigolactone perception in barley drought response. BMC Plant Biology. Sept 22. doi: 10.1186/s12870-023-04450-1. Download Scandola S, Mehta D, Castillo B, Boyce N and Uhrig RG. Systems-level proteomics and metabolomics reveals the diel molecular landscape of diverse kale cultivars. Frontiers in Plant Science. Jun 26. doi: 10.3389/fpls.2023.1170448. Download Scandola et al 2022 - Pre-Print. BioRxiv. doi: https://doi.org/10.1101/2022.04.09.487754. Download Sakeef N, Scandola S, Kennedy C, Lummer C, Chang J, Uhrig RG, Lin G. Machine learning classification of plant genotypes grown under different light conditions through the integration of multi-scale time-series data. Computational and Structural Biotechnology Journal. Jun 03. doi: 10.1016/j.csbj.2023.05.005. Download Kilburn R, Fedosejevs ET, Mehta D, Soleimani F, Ghahremani M, Monaghan J, Thelen JJ, Uhrig RG, Snedden WA, Plaxton WC. Substrate profiling of the Arabidopsis Ca2+-dependent protein kinase AtCPK4 and its Ricinus communis ortholog RcCDPK1. Plant Science. Mar 15. doi: 10.1016/j.plantsci.2023.111675. Download Boyd A, Luu I, Mehta D, Myers SP, Stewart CB, Shivakumar KR, Snihur KN, Alessi DS, Rodriguez Gallo MC, Veilleux H, Wiltse ME, Borch T, Uhrig RG, Blewett TA. Persisting Effects in Daphnia magna Following an Acute Exposure to Flowback and Produced Waters from the Montney Formation. Environmental Science & Technology. Feb 01. doi: 10.1021/acs.est.2c07441. Download 2022 Mehta D, Ahkami AH, Walley J, Xu SL, Uhrig RG. The incongruity of validating quantitative proteomics using western blots. Nature Plants. Dec 01. doi: 10.1038/s41477-022-01314-8. Download Rodriguez Gallo MC, Li Q, Mehta D, Uhrig RG. Genome-scale analysis of Arabidopsis splicing-related protein kinase families reveals roles in abiotic stress adaptation. BMC Plant Biology. Oct 22. doi: 10.1186/s12870-022-03870-9. Download Adhikary D, Mehta D, Uhrig RG, Rahman H and Kav NV. A Proteome-level investigation into Plasmodiophora brassicae resistance in Brassica napus canola. Frontiers in Plant Science. Mar 24. doi: 10.3389/fpls.2022.860393. Download Mehta D, Scandola S and Uhrig RG. BoxCar and library-free data-independent acquisition substantially improve the depth, range, and completeness of label-free quantitative proteomics. Analytical Chemistry. Jan 3. doi: 10.1021/acs.analchem.1c03338. Download Mehta et al 2020 - Pre-Print. BioRxiv. https://doi.org/10.1101/2020.11.07.372276. Download Scandola S, Mehta D, Rodriguez M, Li Q and Uhrig RG. Multi-omic analysis of the Arabidopsis clock activator mutant rve 4 6 8 reveals connections to carbohydrate metabolism and proteasome regulation. Plant Physiology. 07 June. doi.org/10.1093/plphys/kiac269. Download Scandola et al 2021 - Pre-Print. BioRxiv. https://doi.org/10.1101/2021.10.25.465654. Download |
Smith et al., 2025 - Plant, Cell & Environment
Hassan et al., 2025 - Plant Physiology
Lau & Grubb 2025 - New Phytologist
Li et al., 2025 - New Phytologist
Rodriguez Gallo et al., 2025 - BioRxiv
Geddes-McAlister & Uhrig 2025 - Trends in Plant Science
Anderton & Uhrig 2024 - New Phytologist
Grubb et al., 2024 - Plant Cell and Environment
Mehta et al., 2024 - Science Advances
Rodriguez Gallo et al., 2023 - Molecular Cellular Proteomics
Sakeef et al., 2023 - Computational and Structural Biotechnology Journal
Rodriguez Gallo et al., 2022 - BMC Plant Biology
Mehta et al., 2022 - Analytical Chemistry
Scandola et al., 2022 - Plant Physiology
|
2021
Rodriguez MC*, Mehta D*, Tan M and Uhrig RG. Quantitative proteome and PTMome analysis of Arabidopsis thaliana root responses to persistent osmotic and salinity stress.
Plant and Cell Physiology. Jul 27. https://doi.org/10.1093/pcp/pcab076
Download
Rodriguez et al 2020 - Pre-Print. BioRxiv. https://doi.org/10.1101/2020.12.28.424236
Download
** PCP Research Highlight June 2021 - "Don’t sweat it – multifaceted omics networks help plants cope with stress" **
Download
Schläpfer, P* Mehta D*, Ridderikhoff, C and Uhrig RG. DomainViz: intuitive visualization of consensus domain distributions across groups of proteins.
Nucleic Acids Research. May 22. https://doi.org/10.1093/nar/gkab391
Download
Mehta D, Krahmer J and Uhrig RG. Closing the protein gap in plant chronobiology.
The Plant Journal. Mar 30. https://doi.org/10.1111/tpj.15254
Download
Plant and Cell Physiology. Jul 27. https://doi.org/10.1093/pcp/pcab076
Download
Rodriguez et al 2020 - Pre-Print. BioRxiv. https://doi.org/10.1101/2020.12.28.424236
Download
** PCP Research Highlight June 2021 - "Don’t sweat it – multifaceted omics networks help plants cope with stress" **
Download
Schläpfer, P* Mehta D*, Ridderikhoff, C and Uhrig RG. DomainViz: intuitive visualization of consensus domain distributions across groups of proteins.
Nucleic Acids Research. May 22. https://doi.org/10.1093/nar/gkab391
Download
Mehta D, Krahmer J and Uhrig RG. Closing the protein gap in plant chronobiology.
The Plant Journal. Mar 30. https://doi.org/10.1111/tpj.15254
Download
2020
Uhrig RG, Eschevarria-Zomeno S,Schlapfer P, Grossmann J, Roschitzki B, Koerber N, Fiorani F, Gruissem W. Diurnal Dynamics of the Arabidopsis Rosette Proteome and Phosphoproteome.
Plant Cell Environment. Dec 5. doi: 10.1111/pce.13969
Download
Uhrig et al 2020 - Pre-Print. BioRxiv. doi: 10.1101/2020.09.11.293779
Download
Mehta D, Ghahremani M, Perez-Fernandez M, Tan M, Schlapfer P, Plaxton WC, Uhrig RG. Phosphate and phosphite differentially impact the proteome and phosphoproteome of Arabidopsis suspension cell cultures.
The Plant Journal. Nov 13. doi: 10.1111/tpj.15078
Download
Mehta et al 2020 - Pre-Print. BioRxiv. doi: 10.1101/2020.05.29.124040
Download
Plant Cell Environment. Dec 5. doi: 10.1111/pce.13969
Download
Uhrig et al 2020 - Pre-Print. BioRxiv. doi: 10.1101/2020.09.11.293779
Download
Mehta D, Ghahremani M, Perez-Fernandez M, Tan M, Schlapfer P, Plaxton WC, Uhrig RG. Phosphate and phosphite differentially impact the proteome and phosphoproteome of Arabidopsis suspension cell cultures.
The Plant Journal. Nov 13. doi: 10.1111/tpj.15078
Download
Mehta et al 2020 - Pre-Print. BioRxiv. doi: 10.1101/2020.05.29.124040
Download
2019
Uhrig RG, Schläpfer P, Roschitzki B, Hirsch-Hoffmann M, Gruissem W. Diurnal changes in concerted plant protein phosphorylation and acetylation in Arabidopsis organs and seedlings.
The Plant Journal. Mar 28. doi: 10.1111/tpj.14315.
Download
The Plant Journal. Mar 28. doi: 10.1111/tpj.14315.
Download
2018
Labandera AM, Uhrig RG, Colville K, Moorhead GB, Ng KKS. Structural basis for the preference of the Arabidopsis thaliana phosphatase RLPH2 for tyrosine-phosphorylated substrates.
Science Signaling. 11(524). doi: 10.1126/scisignal.aan8804.
Download
Science Signaling. 11(524). doi: 10.1126/scisignal.aan8804.
Download
2017
Hartl M, Füßl M, Boersema PJ, Jost JO, Kramer K, Bakirbas A, Sindlinger J, Plöchinger M, Leister D, Uhrig G, Moorhead GB, Cox J, Salvucci ME, Schwarzer D, Mann M, Finkemeier I. Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in Arabidopsis.
Molecular Systems Biology. 13(10):949. doi: 10.15252/msb.20177819.
Download
Uhrig RG, Schlapfer P, Mehta D, Hirsch-Hoffmann M and Gruissem W. Genome-scale analysis of regulatory protein acetylation enzymes from photosynthetic eukaryotes.
BMC Genomics. 2017. 18(1):514. doi: 10.1186/s12864-017-3894-0.
Download
Graf A*, Coman D*, Uhrig RG*, Walsh S, Flis A, Stitt M and Gruissem W. Parallel analysis of Arabidopsis circadian clock mutants reveals different scales of transcriptome and proteome regulation.
Open Biology. 7(3). doi: 10.1098/rsob.160333.
Download
Uhrig RG, Labandera A-M, Tang L-Y, Sieben NA, Goudreault M, Yeung ECT, Gingras A-C, Samuel M and Moorhead GB. Activation of mitochondrial protein phosphatase SLP2 by MIA40 regulates seed germination.
Plant Physiology. 173(2):956-969. doi: 10.1104/pp.16.01641.
Download
Molecular Systems Biology. 13(10):949. doi: 10.15252/msb.20177819.
Download
Uhrig RG, Schlapfer P, Mehta D, Hirsch-Hoffmann M and Gruissem W. Genome-scale analysis of regulatory protein acetylation enzymes from photosynthetic eukaryotes.
BMC Genomics. 2017. 18(1):514. doi: 10.1186/s12864-017-3894-0.
Download
Graf A*, Coman D*, Uhrig RG*, Walsh S, Flis A, Stitt M and Gruissem W. Parallel analysis of Arabidopsis circadian clock mutants reveals different scales of transcriptome and proteome regulation.
Open Biology. 7(3). doi: 10.1098/rsob.160333.
Download
Uhrig RG, Labandera A-M, Tang L-Y, Sieben NA, Goudreault M, Yeung ECT, Gingras A-C, Samuel M and Moorhead GB. Activation of mitochondrial protein phosphatase SLP2 by MIA40 regulates seed germination.
Plant Physiology. 173(2):956-969. doi: 10.1104/pp.16.01641.
Download